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The more a residue is shaded the less -likely- it is surrounded.
In this case, the residues we looked at (Arg 24 and Tyr 25) are only slightly red.
Red means the residue is "more exposed than usual".
Whereas blue means "more buried than usual".
Think of it as being exposed to a hot RED fire
or being buried into an eternal cold BLUE gletsjer.
Either one would be bad.
Keep in mind that the reference database contains only X-ray thus larger structures.
A blue region that is a loop is probably misfolded.
Loops are usually red; because they are more exposed than average.
In this molecule the shading is only mild and varied.
It does not indicate such an inside/outside problem.
For example the recent entry 1ADX has a highly buried loop region that might be misfolded.
You can get to the precise numbers of this and all the other checks for all the programs.
Just look in the raw result files of each program's directory.
They're all included in the CING report.
We'll make a convenient link for it soon (issue 152).
Finally, below here are the nice and common PROCHECK_NMR plots.
The plots include the validation of unambiguous restraints.
Please take a look if you have never seen plots like this one.
Where the NOE upper-bound distance is shown in a histogram.
That's all for now.
Please tell me if you liked the report or what we can do to make it better.
Thanks for your interest!